Q: How can I perform motif analysis for all ChIP peaks ?
A: As default, ChIP-Array 2 performs motif analysis for peaks only in promoter region of target genes. To perform motif analysis for all peaks, you have to download the job and get the peaks from
Q: How can I get the target genes detected with the contribution of long-range interaction ?
A: You can intuitively browse the targets in JBrowse and check whether they have TFBS with
Q: I have neither the ChIP-X nor transcriptome data, can I get the putative targets of a factor ?
A: Yes. You can choose to use our builtin data or putative TFBSs by PWM scanning.
Q: Where can I check the TFBSs in the distance around TSS I defined for the method "Rank Product" ?
A: You may download the job and check them in
Q: How can I perform co-occupancy analysis for jobs in mESC library ?
A: You can click
Q: How to view a particle location in JBrowse in the popup window ?
A: Click the
Q: Why I cannot find all the peaks that I uploaded ?
A: JBrowse will only show the peaks in the targets` promoter regions. If you want to check all the peaks, please download the job and check chip-x.bed file.
Q: How can I access my jobs in other browsers ?
A: Just copy the job URL and paster it to other browsers, the job will be automatically added in to you job list in other browsers.